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MDU-PHL / bohra

A pipeline for bioinformatics analysis of bacterial genomes
GNU General Public License v3.0
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Useful enhancements #80

Open JA-Lacey opened 4 months ago

JA-Lacey commented 4 months ago

Hey @kristyhoran List of potential enhancements that could be useful to implement for bohra we have discussed.

  1. make bohra compatible using a contigs only set of inputs - that way can be used for just reference sequences etc.

  2. be able to point to a pre-exisiting kraken outputs in the same way as ---contigs (-c) is used (Kraken is the slowest step after genome assembly so this could speed up run times if kraken has been previously run outside of bohra)

Thanks

tseemann commented 2 months ago

@JA-Lacey can you please break this into separate issues and assign Krsity and label as Enhancement. and then close this issue?