Using -c doesnt_exist.tab should fail

MDU-PHL / bohra

A pipeline for bioinformatics analysis of bacterial genomes

GNU General Public License v3.0

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Using -c doesnt_exist.tab should fail #83

Open tseemann opened 2 months ago

tseemann commented 2 months ago

When i run bohra -c contigs.txt bohra does not fail if contifs.txt does not exist.

I think it should fail, because the user clearly asked you to use it. If they mis-typed the filename, they would never realaise they made a mistake because bohra will just keep running.,

Would be good to make this a fatal error.