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MDU-PHL / pango-collapse

app to collapse Pango lineages for reporting
https://mdu-phl.github.io/pango-collapse/
GNU General Public License v3.0
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how many lineages in P.2? #11

Closed liamxg closed 8 months ago

liamxg commented 8 months ago

Dear @Wytamma, Could you please tell me each VOC, VOI and VUM include how many lineages?

Wytamma commented 8 months ago

P.2 only has P.2

image
liamxg commented 8 months ago

Dear @Wytamma,

P.2 means "B.1.1.28.1"?

Wytamma commented 8 months ago

Hi @liamxg,

I just update the code for the pango-watch tree file above -> https://raw.githubusercontent.com/MDU-PHL/pango-watch/main/tree/data.json

Each node has a num_children field that counts the total number of child lineages for that lineage.

Kind reagds,

Wytamma

liamxg commented 8 months ago

Dear @Wytamma, thanks.

how to view the data.json file, any tools?

image
liamxg commented 8 months ago

when i search CH.1.1 from GISAID, it reports:

image

is this normal?

Wytamma commented 8 months ago

It’s just a JSON file so you should be able to read it in any programming language :D

DV and FK are both sub lineages of CH.1.1

liamxg commented 8 months ago

Dear @Wytamma, Thank you, how could I input it into R, and show it, any tips, I never use json to show data, thanks.