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MEEIBioinformaticsCenter / phy-mer

phy-mer
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phylotree 17 #3

Open leipzig opened 8 years ago

leipzig commented 8 years ago

Hey is there any way to generate a Build_17_-_rCRS-based_haplogroup_motifs.csv? I don't know how you made this but it would be a useful resource for the community.

danielnavarrogomez commented 8 years ago

Hi Lejemy,

This is on my To-Do list, I will try to get it tested and pushed by next month.

leipzig commented 7 years ago

any movement on this?

danielnavarrogomez commented 7 years ago

Trying to get all necessary data, sorry for the delay...

danielnavarrogomez commented 7 years ago

Hi @leipzig

I'm working on a library that is able to extract info from PhyloTree, when done, I should be able to get the file equivalent file to Build16-_rCRS-based_haplogroup_motifs.csv but for the V17.

Check it out: https://github.com/MEEIBioinformaticsCenter/PhyloTree_lib

leipzig commented 7 years ago

ok thanks. I no longer work in this area but I will pass this along to my successor.

xgai commented 7 years ago

Fantastic,Daniel. Phy-met has been cited in multiple publications and it has been used more and more.

Xiaowu

On Thu, Oct 12, 2017 at 10:31 AM Daniel Navarro-Gomez < notifications@github.com> wrote:

Hi @leipzig https://github.com/leipzig

I'm working on a library that is able to extract info from PhyloTree, when done, I should be able to get the file equivalent file to Build16-_rCRS-based_haplogroup_motifs.csv but for the V17.

Check it out: https://github.com/MEEIBioinformaticsCenter/PhyloTree_lib

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/MEEIBioinformaticsCenter/phy-mer/issues/3#issuecomment-336209551, or mute the thread https://github.com/notifications/unsubscribe-auth/AHfRIx5RmaOotyJyAvjoMdPZwBKAR8O0ks5srkzZgaJpZM4J_Jsk .

nuin commented 6 years ago

Hi

Any update on this? It seems that Phylotree_lib doesn't output the file format required by Phy-mer.

Thanks

danielnavarrogomez commented 6 years ago

Unfortunately, I only work on this project on my spare time... and looks like it's being a busy year.

nuin commented 6 years ago

Yes, the number of abandonware after publication in Bioinformatics is amazing. Thanks for letting me know.

leipzig commented 6 years ago

Hi Paulo, Your donation check must have gotten lost in the mail. Could you provide a valid credit card number?

Thanks!

On Tue, Jun 19, 2018 at 11:13 AM Paulo Nuin notifications@github.com wrote:

Yes, the number of abandonware after publication in Bioinformatics is amazing. Thanks for letting me know.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/MEEIBioinformaticsCenter/phy-mer/issues/3#issuecomment-398435671, or mute the thread https://github.com/notifications/unsubscribe-auth/AAJCF5IC1pxRatMbNvcnVw2OZ0fXq9uxks5t-RUFgaJpZM4J_Jsk .

nuin commented 6 years ago

Give me a call and I give you the number.

1 - 800 - 328 - 5447

danielnavarrogomez commented 6 years ago

I'd rather prefer someone chipping in with time/commits than money :-)

nuin commented 6 years ago

I was going to, check the code for Phylotree_lib, but now I won't even use either anymore.

You can thank @leipzig for that.