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MEGA-GO / MegaGO

Calculate semantic distance for sets of Gene Ontology terms
MIT License
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Split computations per GO domain #26

Closed pverscha closed 4 years ago

pverscha commented 4 years ago

This PR splits the similarity score that's computed into three different parts (one for each GO domain).

The input format for the script has also changed. It now requires 2 CSV-files that each contain one GO-term per row. It's also possible to directly pass a set of GO-terms to the command, delimited by ';', as can be seen in this screenshot:

Screenshot 2020-06-04 at 10 30 06

Tests have been updated to reflect the changes made in this PR.

pverscha commented 4 years ago

@rababerladuseladim Thanks! I completely agree. These should indeed be logged. I'll fix it right away.

pverscha commented 4 years ago

GO-terms are now logged when they are not found in the parsed GO-ontology (only when verbose is enabled).