generate schema files for each assay to describe metadata

MEP-LINCS / knowledgeportal

Tracking issues related to https://www.synapse.org/mep_lincs

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generate schema files for each assay to describe metadata #53

Open kdaily opened 5 years ago

kdaily commented 5 years ago

Anticipating comments from interested users to have standardized description of all metadata. We can derive a JSON representation of the metadata.

danielderrick commented 5 years ago

I took a stab at this for the RNAseq data. I have a basic idea of what a JSON schema is, but I haven't generated one before. Does this look like a start?

(had to change extensions to txt)

MCF10A_RNAseq_example_metadata.txt MCF10A_RNAseq_schema_draft.txt

markdane commented 5 years ago

@kdaily I need some direction on this if it still needs to be done for each assay.

kdaily commented 5 years ago

I started with the ones @danielderrick provided and came up with these:

https://github.com/MEP-LINCS/knowledgeportal/tree/master/schemas

The 'File' schema is to validate what annotations are provided on the Synapse file entity. The 'sample' schema is based on the master sample metadata file you provided.