Adjust Conversion of End Notes and References

[gmeben]

Problem/Why

Currently, Pandoc does not separate references from end/footnotes. For ease of review, it would be nice to have a bibliography section and a note section that are separate.

Also brings up a larger issue: journals often have different ways that they accept citations. Are we going to make sure that in the guide for each journal there is a space for specifying how bibliographies and citations and annotations should be put into draft submissions?

Goal/What

• The conversion will be based on what is capable of being done with Pandoc.
• Add better delineation between references and footnotes (a title perhaps)
• Add working hyperlinks between footnote references and footnotes so that a user can jump between them

Solution/How

To Do / Acceptance Criteria

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Review Checklist

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Accessibility Checklist

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[wreality]

Closing with the note that pandoc doesn't separate references and endnotes in it's parsing, so treating them differently is currently not possible unfortunately.