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MEpathway / UP-Finder

A tool to identify gene overexpression strategies
Apache License 2.0
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Bug or error? #1

Open babak4th opened 7 years ago

babak4th commented 7 years ago

Hi, While using the UP-finder, I face these errors: Struct contents reference from a non-struct array object.

Error in software_gui>pushbutton1_Callback (line 85) set(handles.text4, 'String', filename);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in software_gui (line 42) gui_mainfcn(gui_State, varargin{:});

Error in matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)software_gui('pushbutton1_Callback',hObject,eventdata,guidata(hObject)) Error while evaluating UIControl Callback

What can I do to avoid these?Are these a bug or error?

MEpathway commented 7 years ago

Hi, can you talk more about your simulation by using UP Finder? For example, how did you initiate the GUI, and which .xml model you were testing?

babak4th commented 7 years ago

I was about to test the UP finder for e.coli core.xml using MATLAB R2016a. I copied UP finder folder in Cobra toolbox folder, Initiate GUI by double clicking on software_gui.fig through MATLAB and click on Org. After clicking on Org, I encounter aforementioned errors.

On Sat, Sep 2, 2017 at 9:02 PM, MEpathway notifications@github.com wrote:

Hi, can you talk more about your simulation by using UP Finder? For example, how did you initiate the GUI, and which .xml model you were testing?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/MEpathway/UP-Finder/issues/1#issuecomment-326754828, or mute the thread https://github.com/notifications/unsubscribe-auth/AdK-zcuctDs6LbkPwYxx_BdwkmUy7JWzks5seYM6gaJpZM4PDun- .

MEpathway commented 7 years ago

Try the following steps that may help: [1] Check if the COBRA toolbox runs well for reading SBML model and also check if LP solver runs well [2] To initiate GUI, right click "software_gui.m" and click "Run" to open the interface, then it would be fine to load an organism model.

Nattapatt commented 6 years ago

I have faced the errors like the first issue. My Cobra can read SBML model well and LP solver also runs well but I cannot input the SBML file into the GUI. Do you have any solutions to fix this error ?

MEpathway commented 6 years ago

I have faced the errors like the first issue. My Cobra can read SBML model well and LP solver also runs well but I cannot input the SBML file into the GUI. Do you have any solutions to fix this error ?

Hi, when you initiated GUI, did you right click "software_gui.m" and click "Run" to open the interface? Don't double click "software_gui.m". Also, always initiate COBRA toolbox before initiating GUI.

Nattapatt commented 6 years ago

Thank you so much for you solution. I have tried to run "software_gui.fig" but it showed the error that I told you. It was my mistake sorry for inconvenient.

ในวันที่ อ. 9 ต.ค. 2018 เวลา 09:46 MEpathway notifications@github.com เขียนว่า:

I have faced the errors like the first issue. My Cobra can read SBML model well and LP solver also runs well but I cannot input the SBML file into the GUI. Do you have any solutions to fix this error ?

Hi, when you initiated GUI, did you right click "software_gui.m" and click "Run" to open the interface? Don't double click "software_gui.m". Also, always initiate COBRA toolbox before initiating GUI.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/MEpathway/UP-Finder/issues/1#issuecomment-428041554, or mute the thread https://github.com/notifications/unsubscribe-auth/Ap8B_NkXov7fC18iHfrUFV7DpjVAm0Zgks5ujA4cgaJpZM4PDun- .