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MG-RAST / matR

Metagenomics Analysis Tools
https://mg-rast.github.io/matR
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Build error in current version #6

Closed joey711 closed 12 years ago

joey711 commented 12 years ago

(On a MacBook Pro running OS X Lion and brand-new installation of all packages and R 2.15.0)

The following installation code:

# Install directly from GitHub: "KbaseKit"
library(devtools)
install_github("matR", "MG-RAST")

Results in the following installation error and failed build:

* checking for file '/private/var/folders/w4/9v9h12z91jzfxhdk3s2fdyf00000gn/T/RtmpDNB4y7/MG-RAST-matR-54ddf7c/DESCRIPTION' ... OK
* preparing 'KbaseKit':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'KbaseKit_0.9.tar.gz'
* installing *source* package 'KbaseKit' ...
** R
Error in parse(outFile) : 10:41: unexpected symbol
9:         cat ("typeof =", typeof (a), "  mode =", mode (a), "  class =", class (a), "\nsummary:\n")
10:         print ("dimensions = ", dim (a))shh
                                           ^
ERROR: unable to collate and parse R files for package 'KbaseKit'
* removing '/Library/Frameworks/R.framework/Versions/2.15/Resources/library/KbaseKit'
Error: Command failed (1)
braithwaite commented 12 years ago

thanks. that was some random noise that crept in. it's gone now.