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MGEScan / mgescan

A Galaxy based system for identifying retrotransposons in genome
http://mgescan.github.io/mgescan/
GNU General Public License v3.0
6 stars 5 forks source link

MGEScan c needs ld library path to find -lm? #10

Open lee212 opened 8 years ago

lee212 commented 8 years ago

galaxy toolshed fails

* buffer overflow detected *: /mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan terminated ======= Backtrace: ========= /lib/x86_64-linux-gnu/libc.so.6(+0x7338f)[0x7f2dae27838f] /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f2dae30fc9c] /lib/x86_64-linux-gnu/libc.so.6(+0x109b60)[0x7f2dae30eb60] /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan[0x40258b] /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan[0x402cf3] /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan[0x404141] /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan[0x40103a] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f2dae226ec5] /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan[0x4010c2] ======= Memory map: ======== 00400000-00406000 r-xp 00000000 fd:01 402856 /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan 00605000-00606000 r--p 00005000 fd:01 402856 /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan 00606000-00607000 rw-p 00006000 fd:01 402856 /home/cc/shed_tools/mgescan/3.0.0/hyungrolee/package_mgescan_3_0_0/85a4d7be4f65/mgescan/mgescan/nonltr/hmm/MGEScan 01ae9000-01b2d000 rw-p 00000000 00:00 0 [heap] 7f2da1a6a000-7f2da1a80000 r-xp 00000000 fd:01 1901 /lib/x86_64-linux-gnu/libgcc_s.so.1 7f2da1a80000-7f2da1c7f000 ---p 00016000 fd:01 1901 /lib/x86_64-linux-gnu/libgcc_s.so.1 7f2da1c7f000-7f2da1c80000 rw-p 00015000 fd:01 1901 /lib/x86_64-linux-gnu/libgcc_s.so.1 7f2da1c80000-7f2dae205000 rw-p 00000000 00:00 0 7f2dae205000-7f2dae3c0000 r-xp 00000000 fd:01 58558 /lib/x86_64-linux-gnu/libc-2.19.so 7f2dae3c0000-7f2dae5bf000 ---p 001bb000 fd:01 58558 /lib/x86_64-linux-gnu/libc-2.19.so 7f2dae5bf000-7f2dae5c3000 r--p 001ba000 fd:01 58558 /lib/x86_64-linux-gnu/libc-2.19.so 7f2dae5c3000-7f2dae5c5000 rw-p 001be000 fd:01 58558 /lib/x86_64-linux-gnu/libc-2.19.so 7f2dae5c5000-7f2dae5ca000 rw-p 00000000 00:00 0 7f2dae5ca000-7f2dae6cf000 r-xp 00000000 fd:01 58543 /lib/x86_64-linux-gnu/libm-2.19.so 7f2dae6cf000-7f2dae8ce000 ---p 00105000 fd:01 58543 /lib/x86_64-linux-gnu/libm-2.19.so 7f2dae8ce000-7f2dae8cf000 r--p 00104000 fd:01 58543 /lib/x86_64-linux-gnu/libm-2.19.so 7f2dae8cf000-7f2dae8d0000 rw-p 00105000 fd:01 58543 /lib/x86_64-linux-gnu/libm-2.19.so 7f2dae8d0000-7f2dae8f3000 r-xp 00000000 fd:01 58551 /lib/x86_64-linux-gnu/ld-2.19.so 7f2daeae6000-7f2daeae9000 rw-p 00000000 00:00 0 7f2daeaef000-7f2daeaf2000 rw-p 00000000 00:00 0 7f2daeaf2000-7f2daeaf3000 r--p 00022000 fd:01 58551 /lib/x86_64-linux-gnu/ld-2.19.so 7f2daeaf3000-7f2daeaf4000 rw-p 00023000 fd:01 58551 /lib/x86_64-linux-gnu/ld-2.19.so 7f2daeaf4000-7f2daeaf5000 rw-p 00000000 00:00 0 7fffd45d0000-7fffd45f2000 rw-p 00000000 00:00 0 [stack] 7fffd45fe000-7fffd4600000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]