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MGEScan / mgescan

A Galaxy based system for identifying retrotransposons in genome
http://mgescan.github.io/mgescan/
GNU General Public License v3.0
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mpi is not tested from toolshed #11

Open lee212 opened 8 years ago

YuntaoTan commented 5 years ago

hi, @lee212 , do you have plan to test mpi? this is very important for big genome. thanks. i try to use with --mpi=20, but following error i got:

[mpiexec@mu01] match_arg (utils/args/args.c:159): unrecognized argument mca
[mpiexec@mu01] HYDU_parse_array (utils/args/args.c:174): argument matching returned error
[mpiexec@mu01] parse_args (ui/mpich/utils.c:1596): error parsing input array
[mpiexec@mu01] HYD_uii_mpx_get_parameters (ui/mpich/utils.c:1648): unable to parse user arguments
[mpiexec@mu01] main (ui/mpich/mpiexec.c:149): error parsing parameters
lee212 commented 5 years ago

I will try to replicate but it may take some extra time to get back to you. Thanks for understanding.

YuntaoTan commented 5 years ago

@lee212 Thank you very much! Wating for your good news!

YuntaoTan commented 5 years ago

hi, @lee212 another solution, split the genome. if I split the genome by Contig or Chromosome, is there any nagative effect?