MGHComputationalPathology CellTics issues - Githubissues

MGHComputationalPathology / CellTics

Center for Integrated Diagnostics at Mass General Hospital NGS tools

BSD 3-Clause "New" or "Revised" License

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issues

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Issue with when using single thread

#16 sybrohee opened 1 year ago
0
Chr issue in BAM

#15 sybrohee opened 1 year ago
1
Fix to use ref_seq if specified irrespective of bam_file

#14 pieterlukasse opened 4 years ago
1
Fix error for insdel position calculation

#13 alliemclean opened 4 years ago
0
a situation that three variants of EGFR exon19 deletion can't be merged to one

#12 ShannonDaddy opened 4 years ago
3
Fix to use ref_seq if specified irrespective of bam_file

#11 pieterlukasse closed 4 years ago
0
reference fasta file provided via --ref-seq option is NOT used if a bam file is not provided via --bam-file

#10 guruprasada opened 4 years ago
0
Am doc

#9 alliemclean closed 4 years ago
0
Wrong WARNING message?

#8 pieterlukasse closed 4 years ago
5
multi-threading option doesn't work when we have to use our own reference file

#7 pieterlukasse opened 4 years ago
5
Many warnings when running setup.py

#6 pieterlukasse closed 4 years ago
3
No AF output and DP output

#5 lidd77 closed 4 years ago
2
Am bugfix

#4 alliemclean closed 5 years ago
0
Am update

#3 alliemclean closed 5 years ago
0
No module named 'celltics.lib'

#2 azerxu closed 5 years ago
2
Speed Optimizations

#1 alliemclean closed 5 years ago
0