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MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software

An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
MIT License
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Error: Cannot find input file or dir ~/fastq/pig/Pig_spinal_cord_cDNA1_2.fq.gz. #20

Closed zhangw376 closed 2 months ago

zhangw376 commented 1 year ago

cDNAfastq1 有1_1，1_2，1_3时候，用DNBC4tools run --cDNAfastq1 ~/fastq/pig/Pig_spinal_cord_cDNA1_1.fq.gz,~/fastq/pig/Pig_spinal_cord_cDNA1_2.fq.gz,~/fastq/pig/Pig_spinal_cord_cDNA1_3.fq.gz只能读到1_1, 报错Error: Cannot find input file or dir ~/fastq/pig/Pig_spinal_cord_cDNA1_2.fq.gz.

lishuangshuang0616 commented 1 year ago

Are you sure it’s ~/fastq/pig/Pig_spinal_cord_cDNA1_2.fq.gz and not /fastq/pig/Pig_spinal_cord_cDNA1_2.fq.gz? You can manually check if the file exists using the less command.

zhangw376 commented 1 year ago

it is ~/, in my home directory, and I have solved this problem by merging these sub files into one file, but I think maybe there is a bug. thanks~