MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software

An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
MIT License
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dnbc4tools atac run 运行报错 #64

Closed Ruvic-chen closed 4 months ago

Ruvic-chen commented 6 months ago

您好,我最近在singularity上运行dnbc4tools atac run遇到了报错,希望可以得到帮助,报错信息如下: Screenshot 2024-04-01 093325

lishuangshuang0616 commented 6 months ago

Based on your data, the software cannot recognize the sequence structure. Could you please provide screenshots of the first few sequences of R1 and R2?

Ruvic-chen commented 6 months ago

Based on your data, the software cannot recognize the sequence structure. Could you please provide screenshots of the first few sequences of R1 and R2?

这是R1的序列信息 R1 这是R2的序列信息 R2

lishuangshuang0616 commented 6 months ago

Was your data mixed with the Illumina library and used APP-D reagent?

hullv commented 6 months ago

Was your data mixed with the Illumina library and used APP-D reagent?

hello, i meet the same error. If my data is mixed with the Illumina library and APP-D reagent is used, how should the data be processed?

lishuangshuang0616 commented 6 months ago

The data cannot be analyzed because the cell barcode and umi sequences cannot be sequenced. @hullv

hullv commented 6 months ago

The data cannot be analyzed because the cell barcode and umi sequences cannot be sequenced. @hullv RNA cannot be analyzed? Can't ATAC be analyzed either?

lishuangshuang0616 commented 6 months ago

scRNA has no effect and can be analyzed. scATAC cannot analyze. @hullv