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MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software

An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
MIT License
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subprocess.CalledProcessError #80

Open hullv opened 2 weeks ago

hullv commented 2 weeks ago

image 您好，我在分析ATAC的时候报错如上。请问这个问题应该如何解决呢？

lishuangshuang0616 commented 2 weeks ago

Provide the logs in the log directory and screenshots of 01.data.

hullv commented 2 weeks ago

image image

lishuangshuang0616 commented 2 weeks ago

The error is that there is insufficient memory when calculating the similarity between beads. Can you add more memory than the current one you provide?

hullv commented 2 weeks ago

好的，我会使用更多的内存进行分析。感谢您的帮助！

lishuangshuang0616 commented 2 weeks ago

Also, the chrom.sizes file in the database could be only retain the main chromosome information if insufficient memory . For example, for mouse the chromosomes starting with chr are retained, and other chromosomes can be deleted.