MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0

SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data

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Files empty #2

Open AroobAlhumaidy opened 2 years ago

AroobAlhumaidy commented 2 years ago

Dear Developers,

I have installed the pipeline when I reached the running step and submitted the run using this command: $ python3 /mnt/e/Bioinformatics/tools/MGI_SARS-CoV-2_Multi-PCR_v1.0/SARS-CoV-2_Multi-PCR_v1.0/bin/Main_SARS-CoV-2.py -i input.json $ nohup sh main.sh & $ jobs # (to check the running)

The issue:

- all the files in the directory is empty

If you could help me with the solution? Thanks

AroobAlhumaidy commented 2 years ago

Enclosed are the log files from the shell directory step0.GenerateData.sh.1236.log step1.filter.sh.1328.log step2.bwa.sh.1385.log step3.bamdst.sh.1456.log step4.CutPrimer.sh.1611.log step5.statistic.sh.1668.log step6.AlignVariant.sh.1694.log step7.GetReport.sh.2269.log