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MGX-metagenomics / GPMS

General Project Management System
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NullPointerException at ResultCollector.done when trying to visualize SeqRun #74

Closed sjaenick closed 7 years ago

sjaenick commented 7 years ago

In gitlab by @pblumenk on May 31, 2016, 13:50

SeqRun has 3 Jobs. 1 FINISHED, 1 SUBMITTED and 1 FAILED.


java.lang.NullPointerException
    at de.cebitec.mgx.common.VGroupManager.getDistributions(VGroupManager.java:219)
    at de.cebitec.mgx.gui.attributevisualization.util.ResultCollector.doInBackground(ResultCollector.java:38)
    at de.cebitec.mgx.gui.attributevisualization.util.ResultCollector.doInBackground(ResultCollector.java:19)
    at javax.swing.SwingWorker$1.call(SwingWorker.java:295)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at javax.swing.SwingWorker.run(SwingWorker.java:334)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
Caused: java.util.concurrent.ExecutionException
    at java.util.concurrent.FutureTask.report(FutureTask.java:122)
    at java.util.concurrent.FutureTask.get(FutureTask.java:192)
    at javax.swing.SwingWorker.get(SwingWorker.java:602)
[catch] at de.cebitec.mgx.gui.attributevisualization.util.ResultCollector.done(ResultCollector.java:54)
    at javax.swing.SwingWorker$5.run(SwingWorker.java:737)
    at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:832)
    at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:112)
    at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:842)
    at javax.swing.Timer.fireActionPerformed(Timer.java:313)
    at javax.swing.Timer$DoPostEvent.run(Timer.java:245)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
    at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:159)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

java.lang.NullPointerException
    at de.cebitec.mgx.gui.attributevisualization.util.ResultCollector.done(ResultCollector.java:60)
    at javax.swing.SwingWorker$5.run(SwingWorker.java:737)
    at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:832)
    at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:112)
    at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:842)
    at javax.swing.Timer.fireActionPerformed(Timer.java:313)
    at javax.swing.Timer$DoPostEvent.run(Timer.java:245)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
    at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:159)
[catch] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
sjaenick commented 7 years ago

In gitlab by @sjaenick on May 31, 2016, 19:46

mentioned in commit 3fc8942021f721736f5f42775411db0cf97da7ea

sjaenick commented 7 years ago

In gitlab by @pblumenk on Jun 14, 2016, 17:17


SEVERE [org.openide.util.Exceptions]
java.lang.AssertionError
    at de.cebitec.mgx.common.VGroupManager.getDistributions(VGroupManager.java:208)
    at de.cebitec.mgx.gui.attributevisualization.util.ResultCollector.doInBackground(ResultCollector.java:38)
    at de.cebitec.mgx.gui.attributevisualization.util.ResultCollector.doInBackground(ResultCollector.java:19)
    at javax.swing.SwingWorker$1.call(SwingWorker.java:295)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at javax.swing.SwingWorker.run(SwingWorker.java:334)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
Caused: java.util.concurrent.ExecutionException
    at java.util.concurrent.FutureTask.report(FutureTask.java:122)
    at java.util.concurrent.FutureTask.get(FutureTask.java:192)
    at javax.swing.SwingWorker.get(SwingWorker.java:602)
[catch] at de.cebitec.mgx.gui.attributevisualization.util.ResultCollector.done(ResultCollector.java:54)
    at javax.swing.SwingWorker$5.run(SwingWorker.java:737)
    at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:832)
    at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:112)
    at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:842)
    at javax.swing.Timer.fireActionPerformed(Timer.java:313)
    at javax.swing.Timer$DoPostEvent.run(Timer.java:245)
    at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
    at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
    at java.awt.EventQueue.access$500(EventQueue.java:97)
    at java.awt.EventQueue$3.run(EventQueue.java:709)
    at java.awt.EventQueue$3.run(EventQueue.java:703)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
    at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
    at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:159)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
    at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
    at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
    at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
sjaenick commented 7 years ago

In gitlab by @sjaenick on Jul 8, 2016, 18:09

to reproduce:

sjaenick commented 7 years ago

In gitlab by @sjaenick on Aug 19, 2016, 16:21

mentioned in commit fe9fb59e5253ab500426e6f526a40b744b499788