Open ereyred opened 5 months ago
Hi!
Could you post what comes out when you do
head out.txt
? Then I can see why it would complain about the classification file. Also, what output file are you adding names to and trying to summarise?
Best, Tina
vRA1_NODE_10015_length_6181_cov_25.230517_g1063_i9||full_1 ORF has no hit to database vRA1_NODE_10015_length_6181_cov_25.230517_g1063_i9||full_2 ORF has no hit to database vRA1_NODE_10015_length_6181_cov_25.230517_g1063_i9||full_3 3 1;10239;2731341;2731360;2731618;2731619 57.8 Viruses Uroviricota Caudoviricetes no support no support no support no support vRA1_NODE_10016_length_6181_cov_24.993451_g1063_i10||full_1 ORF has no hit to database vRA1_NODE_10016_length_6181_cov_24.993451_g1063_i10||full_2 ORF has no hit to database vRA1_NODE_10016_length_6181_cov_24.993451_g1063_i10||full_3 3 1;10239;2731341;2731360;2731618;2731619 57.8 Viruses Uroviricota Caudoviricetes no support no support no support no support vRA1_NODE_10021_length_6180_cov_10.015883_g28_i61||full_1 ORF has no hit to database vRA1_NODE_10021_length_6180_cov_10.015883_g28_i61||full_2 ORF has no hit to database vRA1_NODE_10021_length_6180_cov_10.015883_g28_i61||full_3 ORF has no hit to database
Hello! I did: $ CAT_pack add_names -i {classification file} -o out.txt -t {taxonomy folder} --only_official and everything looks good but then when I try to run summarise: $ CAT_pack summarise -c {contigs fasta} -i out.txt -o {output file} it tells me that the named classification file is not a classification file: ERROR: out.txt is not a CAT classification file.
What's going on?? Thanks E