Open susheelbhanu opened 1 month ago
Hi @susheelbhanu,
The input file should be tab separated instead of comma separated. Could you try again with a tab separated file?
For reference, converting a comma separated file into a tab separated file can be done with sed
:
sed 's/,/\t/g' output_table.csv > output_table.tsv
Please keep me updated! :)
Best wishes,
Bastiaan
Hi @bastiaanvonmeijenfeldt,
Yeah I realised it after I posted the issue, based on your example in the readme. Seems to be working alright now. Any suggestions on what is a good way to identify cutoffs when using the --c1 and --c2 flags?
I've found that this is a little arbitrary at the moment and depending on the values, the SNB values change quite a bit.
Thank you!
Hi,
I'm trying to run the attached file and despite several combinations of c1 and c2 values, only Nans are produced. Any thoughts on why this might be the case? output_table.csv
Thanks, Susheel