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MHH-RCUG / nf_reporter

Integrate metagenomic reports from our Wochenende metagenomics pipeline, raspir, growth rates and other tools using Nextflow
MIT License
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haybaler ingestion of nf_reporter output #10

Open colindaven opened 2 years ago

colindaven commented 2 years ago

Hi @LisaHollstein

we need to change Haybaler to keep the columns we are adding with growth rate, raspir pos/neg etc.

We'll integrate this better when we get a chance, and into wochenende_postprocess.sh too.

It should only need nextflow as a dependency via bioconda, so hope this will work well.