plots for all input files ?

[colindaven]

• [x] check all are created, not just one input

[colindaven]

Looks fine, example output via tree of pngs

├── DRR_sm_R1
│   ├── high_score
│   │   ├── GenBankID.txt
│   │   └── Scores.csv
│   └── low_med_score
├── ERR9809359_R1
│   ├── high_score
│   │   ├── GenBankID.txt
│   │   └── Scores.csv
│   └── low_med_score
│       └── 1_CP000033_3_Lactobacillus_acidophilus_NCFM__BAC_0.png
├── ERR9809370_R1
│   ├── high_score
│   │   ├── 1_AP006716_1_Staphylococcus_haemolyticus_JCSC1435_DNA__BAC_4.png
│   │   ├── 1_CP003860_1_Streptococcus_anginosus_C1051__BAC_1.png
│   │   ├── 1_CP020618_1_Staphylococcus_hominis_subsp_hominis_strain_K1__BAC_7.png
│   │   ├── GenBankID.txt
│   │   └── Scores.csv
│   └── low_med_score
│       ├── 1_AE005672_3_Streptococcus_pneumoniae_TIGR4__BAC_0.png