singularity container: shinyjs .. new ?

[colindaven]

Hi @mariusrueve

what's with shinyjs ? Does shinyalert (new) rely on this ? Do we need this to be specifically added in the recipe ?

Please provide a comprehensive list of R packages you need when you change something, or even better, just directly edit the singularity recipes.

cheers

singularity exec ../../scrnaseq_app.simg     R -e "options('shiny.port'=3838,shiny.host='0.0.0.0'); shiny::runApp('/data/scrnaseq_app/scrnaseq_app.R')"

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> options('shiny.port'=3838,shiny.host='0.0.0.0'); shiny::runApp('/data/scrnaseq_app/scrnaseq_app.R')
Loading required package: shiny

Attaching package: ‘shinyalert’

The following object is masked from ‘package:shiny’:

    runExample

Error in library(shinyjs) : there is no package called ‘shinyjs’
Calls: <Anonymous> ... sourceUTF8 -> eval -> eval -> ..stacktraceon.. -> library
Execution halted

[colindaven]

So I added shinyjs - correctly, now I need zip. Any more ??

Attaching package: ‘shinyjs’

The following object is masked from ‘package:shinyalert’:

    runExample

The following object is masked from ‘package:shiny’:

    runExample

The following objects are masked from ‘package:methods’:

    removeClass, show

Error in library(zip) : there is no package called ‘zip’

[mariusrueve]

Yes shinyjs is new, I use this to close shinyalerts on certain events. Currently these are in the code:

library(shiny)
library(Seurat)
library(ggplot2)
library(shinythemes)
library(markdown)
library(readxl)
library(shinyalert)
library(shinyjs)
library(zip)

I need to reconsider some packages and if they are really needed.

[colindaven]

Thanks Marius,

the container is running again after adding those new libs.

cheers, Colin

options('shiny.port'=3838,shiny.host='0.0.0.0'); shiny::runApp('/data/scrnaseq_app/scrnaseq_app.R') Loading required package: shiny

Attaching package: ‘shinyalert’

The following object is masked from ‘package:shiny’:

runExample

Attaching package: ‘shinyjs’

The following object is masked from ‘package:shinyalert’:

runExample

The following object is masked from ‘package:shiny’:

runExample

The following objects are masked from ‘package:methods’:

removeClass, show

Attaching package: ‘zip’

The following objects are masked from ‘package:utils’:

unzip, zip

[Oliver-D-B]

great, many thanks to both of you @colindaven @mariusrueve !!!