MK: BUG/Optimization List

[kosankem]

That is what I noticed: Import Data:

• [x] The description what format of excl table is needed for input of target genes should be directly on the same page as example
• [x] The excel table input did not work with Ensembl_ID. It only worked when I used the names_numbers that you also can select in the "select genes" field. But that is not the Ensembl_ID Settings
• [x] A description of what is "data", "count", "RNA", and "SCT" would be good. Even better it would be to not give the choice if not appropriated. I guess "count" are the unscaled data. I think I would not give the change to choose that. It gets confusing for everyone who is not working with scRNA seq data much.
• [x] dpi 300 would be nice Plots
• [ ] I would not show plots for raw data
• [ ] Violin Plot without single dots (pt.size=0)
• [ ] Label/Gene names of heatmap are missing
• [ ] Something with the heatmap is wrong. The results of my target genes are not shown as I would expect and also not in accordance with the other plots

[mariusrueve]

Thank you for the detailed list!

[mariusrueve]

"dpi 300" can be set with res (ppi) in the settings tab. Or do you mean something else? Maybe the pointsize?

[kosankem]

Ne, das ist dann schon richtig. Ich hatte mich nur durch die Voreinstellungen von 70 ppi, 110 ppi, und 144 ppi, die es als Auswahlmöglichkeit gibt, verwirren lassen und gar nicht gesehen, dass man auch separat einen Wert eintragen kann.

[mariusrueve]

Ich füge dann einfach 300 ppi als weiteren Wert hinzu