MIC-DKFZ / HD-BET

MRI brain extraction tool
Apache License 2.0
255 stars 61 forks source link

more graceful installation without development mode and separate download of model weights? #42

Open neuronflow opened 1 year ago

neuronflow commented 1 year ago

hd-bet seems to require an installation in development mode (-e flag)

This installation creates a folder on the users system.

What changes would be needed to no longer require dev mode? Did you consider directly downloading the model weights with the installation of HD-BET?

Context: Currently, we are trying to work on an update for https://github.com/neuronflow/BraTS-Toolkit

I again would like to incorporate HD-BET and have everything pip installable.

neuronflow commented 1 year ago

Changes here would enable to install HD-BET like every other dependency.

neuronflow commented 11 months ago

We now made a fork of HD-BET that is installable from pypi. Will write you an email soon as I have some questions :)