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MIC-DKFZ / MITK-Diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
http://mitk.org/wiki/MITK
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unable to create mask in MITK diffustion #15

Open lvxy-wwy opened 4 days ago

lvxy-wwy commented 4 days ago

In newest version, lables or ROIs could not create masks so that could not select ROI in IVIM windows.

Snipaste_2024-11-22_17-33-36

Snipaste_2024-11-22_17-36-23

peterneher commented 4 days ago

Hi. THis is indeed an issue since MITK changed to multi-label images. I never updated MITK Diffusion. Nevertheless, a workaround is to save the segmentation and when loading it again, select "ITK NrrdImageIO" as file reader. The loaded segmentation should work in IVIM.

peterneher commented 4 days ago

@kislinsk is there an easier way to get a binary image from a single label?

kislinsk commented 4 days ago

Yes, you can do it in the Segmentation Utilities:

Screenshot 2024-11-22 132924

lvxy-wwy commented 4 days ago

是的，您可以在分段实用程序中执行此操作：

截图 2024-11-22 132924

There is no ‘extract from segmentation’ tool in my mitk diffusion version windows10 2023.06.06 (https://www.mitk.org/download/diffusion/nightly/). Can you provide an older version of mitk diffusion? Snipaste_2024-11-22_21-35-33

peterneher commented 10 hours ago

MITK Diffusion is currently based on an older MITK version that does not support this directly. SO for the time being, you are stuck with the saving/loading way.

peterneher commented 6 hours ago

I uploaded a new version to https://www.mitk.org/download/diffusion/nightly/

"extract from segmentation" should work there. Could you check if this works for you?