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MIC-DKFZ / MITK-Diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
http://mitk.org/wiki/MITK
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Unable to install MITK-Diffusion #8

Closed YichengZou626 closed 3 months ago

YichengZou626 commented 1 year ago

Hi, I am trying to use MITKFiberDirectionExtraction to transform my own tck file into TOM, which is used for TractSeg model. However, I was stuck on how to install this software for Windows 10 and run the function. Could you please teach me how to install this, or can I show my own data for help? Thanks for your help!

peterneher commented 1 year ago

Dear Yicheng Zou,

sorry for the late reply, I was on vacation. Simply download the installer here and follow the installation wizard

https://github.com/MIC-DKFZ/MITK-Diffusion/#Downloads

Then navigate to the installation folder an call MITKFiberDirectionExtraction.bat in the command line.

One question though. TractSeg does not use TOMs, it generates TOMs from dMRI data. So if you have a tarctogram (e.g. .tck), you can not use this in any way with TractSeg. May I ask what you are trying to accomplish?

Peter

Dr. Peter Neher

Division of Medical Image Computing

Senior Scientist & Division Board Member

German Cancer Research Center (DKFZ)

Foundation under Public Law

Im Neuenheimer Feld 280

69120 Heidelberg

Germany

phone: +49 6221 42-2330

I am mostly working from home at the moment and I am therefore probably not reachable via phone!

@.***

www.dkfz.dehttp://www.dkfz.de/

Management Board: Prof. Dr. Michael Baumann, Ursula Weyrich

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Von: Yicheng Zou @.***> Gesendet: Mittwoch, 1. Februar 2023 16:57 An: MIC-DKFZ/MITK-Diffusion Cc: Subscribed Betreff: [MIC-DKFZ/MITK-Diffusion] Unable to install MITK-Diffusion (Issue #8)

Hi, I am trying to use MITKFiberDirectionExtraction to transform my own tck file into TOM, which is used for TractSeg model. However, I was stuck on how to install this software for Windows 10 and run the function. Could you please teach me how to install this, or can I show my own data for help? Thanks for your help!

- Reply to this email directly, view it on GitHubhttps://github.com/MIC-DKFZ/MITK-Diffusion/issues/8, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AEBK54BMQPGWJL3MPAHQQ6DWVKBWTANCNFSM6AAAAAAUN43AZU. You are receiving this because you are subscribed to this thread.Message ID: @.***>

wht-light commented 5 months ago

Hello, I am trying to compile MITK-Diffusion, but the following problem occurs: 图片 Could you please tell me how to solve this compilation problem?Thanks!

wht-light commented 5 months ago

Hello, may I ask whether mitk supports calling only compiled algorithm libraries such as segmentation module

peterneher commented 5 months ago

Hello, I am trying to compile MITK-Diffusion, but the following problem occurs: 图片 Could you please tell me how to solve this compilation problem?Thanks!

You are trying to build the current master of MITK Diffusuion with an older version of MITK. MITK recently removed OpenCV, and it was instead added to MITK Diffusion. Since you are using an older MITK version, two OpenCV targets exist, wich does not work.

I recommend to use the current MITK Master.

peterneher commented 5 months ago

Hello, may I ask whether mitk supports calling only compiled algorithm libraries such as segmentation module

I am not sure what you mean.