giovannividetta
commented
3 months ago Hi, @aqadi05
I have the same problem and I started discussing with Wasserthal here: https://github.com/MIC-DKFZ/TractSeg/issues/269
In my case the process is killed because of out of memory (OOM) error. Actually, I am running the script on Ubuntu subsystem installed on Windows. I will run TractSeg on a pc with Linux to see if the OOM error persists.
If you want, I let you know as soon as possible!
Tried running TractSeg using Docker, but the process stops abruptly without returning an error. I've pasted the command and output from the terminal below:
sudo docker run --platform linux/amd64/v8 -v /Desktop/decal:/data \ -t wasserth/tractseg_container:master TractSeg -i /data/dwi.nii.gz --raw_diffusion_input
Password:
/usr/local/lib/python3.7/site-packages/pandas/compat/init.py:124: UserWarning: Could not import the lzma module. Your installed Python is incomplete. Attempting to use lzma compression will result in a RuntimeError. warnings.warn(msg) Creating brain mask... Creating peaks (1 of 3)... Creating peaks (2 of 3)... Creating peaks (3 of 3)... Reorienting data... Loading weights from: /root/.tractseg/pretrained_weights_tract_segmentation_v3.npz Processing direction (1 of 3) 100%|███████████████████████████████████████████████████████████████████████████████████████████████| 144/144 [02:39<00:00, 1.11s/it] Processing direction (2 of 3) (base) Desktop %
Any feedback on what might be going on would be appreciated. Thanks!