long time writing to disk

MIC-DKFZ / nnUNet

Apache License 2.0

5.6k stars 1.71k forks source link

long time writing to disk #2072

Open sarbabi opened 5 months ago

sarbabi commented 5 months ago

seems like segmentation task is finished (taking less than a minute) as it shows: "done with ...", but for a long time (half and hour) it remains in this stage and no results is written on disk. Screenshot 2024-04-08 155415 any advice?

sarbabi commented 4 months ago

I also have the same when deploying nnUNet on cloud (Azure). the whole time from reading image to writing segmentation is around 25 minutes. it comprises of: -~5 mins compute resource start -~3 mins the segmentation and sending to background for resampling -~12 mins for resampling and export.

my question is there something I'm missing here, because I guess resampling and export process is taking too long?

ReiniertB commented 2 months ago

Hi, this is also something I run into. Any updates on this issue?