search

MIC-DKFZ / nnUNet

Apache License 2.0
5.71k stars 1.73k forks source link

How can I get the trained models of Task082 Brats2020? #442

Closed Lubby-ch closed 2 years ago

FabianIsensee commented 3 years ago

Please make sure to apply the correct formatting to error messages, otherwise they are hard to read. It appears like you are trying to run a 2D U-Net and have not yet run the appropriate nnUNet_plan_and_preprocess. Best, Fabian

FabianIsensee commented 3 years ago

The pretrained models for BraTS 2020 are not yet available for download. You can, however use our docker https://hub.docker.com/repository/docker/fabianisensee/isen2020

If you know your way around the docker container you can also extract the weights from there ;-) I will try to find the time to make the available separately.

FabianIsensee commented 2 years ago

BraTS 2020 dataset conversion is here: https://github.com/MIC-DKFZ/nnUNet/blob/master/nnunet/dataset_conversion/Task082_BraTS_2020.py And the weights can also be downloaded with the nnUNet_download_pretrained_model command