BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
What are you trying to do?
I'm trying to resample the template gradient map included in your toolbox onto the Freesurfer template surfaces (fsaverage) following the HCP wiki instruction. From the instruction, it seems that I would need GIFTI files of the "fs-LR-32k" surfaces with the scalar maps. In your toolbox, filenames have a prefix of "conte69_32k":
matlab/datasets/template_gradients/conte69_32k_fc_gradient1.csvmatlab/datasets/surfaces/conte69_32k_left_hemisphere.gii
I'm not familiar with the HCP name conventions. Is "conte69-32k" a name of a template surface that is also referred to as "fs-LR-32k"? Can I just create new GIFTI files using the included GIFTI and CSV files? If not, you provide the original GIFTI files that you used to create the included CSV files?
If you've tried running this with BrainSpace code already, how did you do so and what went wrong?
What are you trying to do? I'm trying to resample the template gradient map included in your toolbox onto the Freesurfer template surfaces (
fsaverage
) following the HCP wiki instruction. From the instruction, it seems that I would need GIFTI files of the "fs-LR-32k" surfaces with the scalar maps. In your toolbox, filenames have a prefix of "conte69_32k":matlab/datasets/template_gradients/conte69_32k_fc_gradient1.csv
matlab/datasets/surfaces/conte69_32k_left_hemisphere.gii
I'm not familiar with the HCP name conventions. Is "conte69-32k" a name of a template surface that is also referred to as "fs-LR-32k"? Can I just create new GIFTI files using the included GIFTI and CSV files? If not, you provide the original GIFTI files that you used to create the included CSV files?If you've tried running this with BrainSpace code already, how did you do so and what went wrong?
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