Atlas-defined time series output

[benjaminsipes]

• What are you trying to do?

  • MICApipe produces only FC in the various atlases, but it does not seem to produce time series. This could be a bug, since the documentation lists the atlas parcelled time series in the list of outputs: <sub>_func_space-fsnative_atlas-<parc>_desc-timeseries.txt But when we run the functional processing, this is our output directory:

  There is only timeseries output for the fsLR 32k vertex space. Is there a flag that needs to be called to keep the atlas-defined time series?

• Please tell us about your computing environment:

  • Run with singularity container micapipe v0.2.2

[rcruces]

Hello,

First of all, our documentation is outdated for some modules and we are currently working on it. We changed txt to shape.gii because they are lighter and faster to load than txt files. About the time series of the parcellated data, we removed them because it was redundant, each parcellated time series can be obtained from fsLR-32k_desc-timeseries_clean.

I made a little notebook that explains how to do it on this repo preproc_reports

jupyter notebook: from-fsLR-32k_to-parcels.ipynb

best