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MICA-MNI / micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
http://micapipe.readthedocs.io
GNU General Public License v3.0
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adding JuBrain parcellation #23

Closed neuroimagingdatascience closed 6 months ago

neuroimagingdatascience commented 2 years ago

Hi Raul/Jess - together with Casey, we were discussing to incorporate the JuBrain parcellation into the default parcellations that are used for connectome generation in a future release of micapipe. She has already the parcellation in MNI152 but also fsaverage and conte69. The parcellation is partial (ie not all brain regions have a label) but this may nevertheless be useful to link micapipe with some of the julich projects for hiball etc. - what do you think?

caseypaquola commented 2 years ago

Slight correction I have the maximum probabilty map (MPM) parcellation on fsaverage and fsaverage5. The conte69 version is halted at the moment because the gifti version of the file on fsaverage appears to be faulty (https://search.kg.ebrains.eu/?facet_type[0]=Dataset&q=julich%20brain#ff1bae02-857d-4d1b-8b2d-b9dbd583a459). Does anyone have a good way to convert from an .annot on fsaverage to a .label.gii on conte69?

rcruces commented 2 years ago

would be nice to develop an easier way to include any custom parcellation. Maybe a tutorial explaining how to create the surfaces and labels, and how to share them with the micapipe developers.

rcruces commented 1 year ago

We will evaluate the possibility to include custom or new parcellations on future releases @royj23

rcruces commented 6 months ago

This enhancement not be implemented in the pipeline. I will close the issue. If you want to work on it please feel free to re-open the issue.