Use existing freesurfer output from fmriprep or qsiprep

MICA-MNI / micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

http://micapipe.readthedocs.io

GNU General Public License v3.0

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Use existing freesurfer output from fmriprep or qsiprep #46

Closed dkp closed 2 years ago

dkp commented 2 years ago

Freesurfer recon_all takes a long time to run, and occupies a fair bit of space. It'd be great if you could specify an existing freesurfer directory that micapipe could use. qsiprep and fmriprep both now implement this capability.

dkp commented 2 years ago

I apologize...it looks like -freesurfer_dir addresses this issue. Mea culpa.