Mica reports that it couldn't find any dwi file

Neuro-en commented 2 years ago

What are you trying to do?
If you've tried running this with BrainSpace code already, how did you do so and what went wrong?
Please tell us about your computing environment:
Other information

Neuro-en commented 2 years ago

I have read the provided tutorials, my data is the same as cam-CAN. i attach the command that i have tried to run: docker run -ti --rm \ -v /home/moslem/data:/bids_dataset:ro \ -v /home/moslem/data/sub-A00056307/derivatives:/output_directory \ -v /home/moslem/tmp:/tmp \ -v /home/moslem/freesurfer/license.txt:/opt/freesurfer-6.0.0/license.txt \ micalab/micapipe:latest \ -sub A00056307 \ -bids /bids_dataset \ -out /output_directory \ -ses BAS1 \ -proc_structural -t1wStr T1w \ -proc_freesurfer -hires \ -post_structural \ -proc_dwi \ -SC \ -proc_rsfmri \ -regAffine -noFIX -regress_WM_CSF \ -mainScanStr task-rest_acq-1400_bold \
-QC_subj i have tried to manually assign the main dwi file, but it didn't work. could you help to find the solution?

ajschadler12 commented 1 year ago

Hi: I believe you said you attempted to use the option -dwi_main, is that correct? what is the error output you get when using this to set the main scan?

rcruces commented 1 year ago

I'm sorry for the late response. Could you show me more about your bids dwi/ main organization?

rcruces commented 1 year ago

The QC reports had an issue and the html file was deprecated. The new version solve all related issues.

v0.2.0 Northern flicker https://github.com/MICA-MNI/micapipe/releases/tag/v0.2.0

MICA-MNI / micapipe

Mica reports that it couldn't find any dwi file #50