micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
this seems to be working for me in my hippunfold experiments. for some reason the reference image seems to matter a lot and keeping it as the MNI image has consistently worked
this seems to be working for me in my hippunfold experiments. for some reason the reference image seems to matter a lot and keeping it as the MNI image has consistently worked