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MICA-MNI / micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
http://micapipe.readthedocs.io
GNU General Public License v3.0
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-QC_subj does not produce QC report for dwi due to outdated json path #88

Closed ajschadler12 closed 11 months ago

ajschadler12 commented 11 months ago

The -QC_subj workflow is unable to create a QC report for -proc_dwi, due to an outdated path being used for the preproc_dwi.json file:

Traceback (most recent call last):
  File "/opt/micapipe/functions/QC.py", line 1658, in <module>
    static_report = qc_module_function['functions'][i](j)
  File "/opt/micapipe/functions/QC.py", line 839, in qc_proc_dwi
    with open( preproc_dwi_json ) as f:
FileNotFoundError: [Errno 2] No such file or directory: '/home/hamilton/locipipe_testing/derivatives/micapipe_v0.2.0/sub-test123/ses-01/dwi/sub-test123_ses-01_desc-preproc_dwi.json'
rcruces commented 11 months ago

Hello, this issue was addressed in the lates version v0.2.2 which is already available at dockerhub https://hub.docker.com/r/micalab/micapipe/tags

Thank you!