Dicom input - Nifti output correspondence

MICLab-Unicamp / medpseg

MEDPSeg: Official implementation of Modified EfficientDet for Pulmonary Polymorphic Segmentation

MIT License

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Dicom input - Nifti output correspondence #3

Closed sonniki closed 4 weeks ago

sonniki commented 1 month ago

Thank you for making your work available, it's really great! I have a question about connecting the output of segmentation to the input. I am providing a folder with DICOM files as input, and I'm getting NIfTI files as output. I'm able to view the images from the output, for example, using the nibabel library in Python, but now I'd like to view the output (specifically, the vessels segmentation) overlaid on top of the original input. Would you have any pointers for me? TIA!

dscarmo commented 1 month ago

Hello!

Software such as ITK-Snap or 3D Slicer can open a DICOM image and add a NifT as a segmentation map. Thanks for using MEDPSeg!

dscarmo commented 4 weeks ago

Closing this, let me know if you need extra help.