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MICS-Lab / scyan

Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.

https://mics-lab.github.io/scyan/

BSD 3-Clause "New" or "Revised" License

33 stars 1 forks source link

[Bug] #38

Open Maelle83 opened 5 months ago

quentinblampey commented 5 months ago

Hello @Maelle83,

Sorry I'm not really familiar with reticulate. I have a few questions though:

is there a reason why you cloned the scyan repository? You can install it via pip install scyan
do you have the same issue when using scyan with Python?
you used the command scyan$model, but in python we do scyan.Scyan to initialize the model. So shouldn't your command be something like scyan$Scyan?