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MICommunity / ComplexViewer

web based visualisation of molecular interaction data
http://complexviewer.org
Apache License 2.0
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Some molecule types not recognised #59

Closed colin-combe closed 9 years ago

colin-combe commented 9 years ago

Some molecule types not recognised by viewer - e.g. 'small nucleolar rna'.

'small nucleolar rna' can have same symbol as other RNA. Birigt to send list of additional molecule types and which symbols to use. Will then fix.

bmeldal commented 9 years ago

Interactor Types not recognised:

single stranded deoxyribonucleic acid MI:0680 double stranded deoxyribonucleic acid MI:0681 small nucleolar rna MI:0609 small nuclear rna MI:0607 transfer rna MI:0325

Group all DNAs by MI:0319 (includes MI:0680 & MI:0681) Group all RNAs by MI:0320 (includes MI:0607 & MI:0609 & MI:0325)

The grouping should be flexible to allow more of the RNA children to be used in future complexes, esp as biologists keep finding new RNA types and we'll be adding more CV to the structure.

Any questions, just shout :)

Birgit

colin-combe commented 9 years ago

OK, should work for all of these now. I added in some other cv terms I could see from the ontology browser (e.g. there's about a dozen different kinds of RNA).

The code responsible for this is in a function called newMolecule (lines 442 - 514 of Controller.js) - it should be fairly readable/easy to maintain.