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MICommunity / psidev

@Deprecated please use https://github.com/HUPO-PSI Code exported from http://sourceforge.net/p/psidev/cvs/
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Update Term ID values to remove duplicate. #83

Open SourceForge-exporter opened 10 years ago

SourceForge-exporter commented 10 years ago

Currently the mzML controlled vocabulary file: http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo

Contains terms with a duplicate ID, which is not allowed according to the OBO standard. See the lines:

[Term]
id: MS:1002289
name: ProteinProphet
def: "A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format." [PMID:14632076]
is_a: MS:1002286 ! Trans-Proteomic Pipeline software

[Term]
id: MS:1002289
name: ASAPRatio
def: "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc." [PSI:PI]

is_a: MS:1002286 ! Trans-Proteomic Pipeline software

This is the only duplicate ID in the file.

Reported by: cornelius1729