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MIT-LCP / mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases
https://mimic.mit.edu
MIT License
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Generating patient logs #79

Closed joel1391 closed 6 years ago

joel1391 commented 8 years ago

Is there a code that can be used to generate logs in MIMIC-III like the logs that were made for MIMC-II? I believe there is a file already made for each MIMIC-II patient but I don't know which version of MIMIC-II it was used in. Here are a couple of links to the logs I'm referring to:

sample annotated log - https://physionet.org/physiobank/database/mimic2cdb-ps/sample/ actual patient log (from public subset) - https://physionet.org/physiobank/database/mimic2cdb-ps/s00439/

alistairewj commented 8 years ago

The code must be kicking around somewhere, though I haven't seen it. If you don't mind my asking, what's the use case for the data in this form? Is it more convenient for some software packages?

On Tue, Feb 16, 2016 at 11:30 PM, joel1391 notifications@github.com wrote:

Is there a code that can be used to generate logs in MIMIC-III like the logs that were made for MIMC-II? I believe there is a file already made for each MIMIC-II patient but I don't know which version of MIMIC-II it was used in. Here are a couple of links to the logs I'm referring to:

sample annotated log - https://physionet.org/physiobank/database/mimic2cdb-ps/sample/ actual patient log (from public subset) - https://physionet.org/physiobank/database/mimic2cdb-ps/s00439/

— Reply to this email directly or view it on GitHub https://github.com/MIT-LCP/mimic-code/issues/79.

joel1391 commented 8 years ago

We've identified an event specific to each patient, and we're looking to explore parameters that are available before and after that event, and the times at which the measurements were made. It's currently more for exploratory purposes.

As a beginner I liked the logs because they displayed a clear timeline of events for each patient and thought that maybe I could eventually mine them for text/data of interest.

alistairewj commented 6 years ago

If you ever ended up building something to do this a PR is welcome - I never found the code to do it.