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MJ10 / BioSeq-GFN-AL

Code for "Biological Sequence Design with GFlowNets", 2022
MIT License
70 stars 16 forks source link

It dosen't work for run_amp.py #1

Open xdzhang-xdu opened 2 years ago

xdzhang-xdu commented 2 years ago

The error is as follows.

/home/sunsun/xdzhang/BioSeq-GFN-AL-master/venv/bin/python /home/sunsun/xdzhang/BioSeq-GFN-AL-master/run_amp.py /usr/lib/python3/dist-packages/requests/init.py:89: RequestsDependencyWarning: urllib3 (1.26.9) or chardet (3.0.4) doesn't match a supported version! warnings.warn("urllib3 ({}) or chardet ({}) doesn't match a supported " Traceback (most recent call last): File "/home/sunsun/xdzhang/BioSeq-GFN-AL-master/run_amp.py", line 402, in main(args) File "/home/sunsun/xdzhang/BioSeq-GFN-AL-master/run_amp.py", line 394, in main oracle = get_oracle(args) File "/home/sunsun/xdzhang/BioSeq-GFN-AL-master/lib/oracle_wrapper.py", line 9, in get_oracle return AMPOracleWrapper(args) File "/home/sunsun/xdzhang/BioSeq-GFN-AL-master/lib/oracle_wrapper.py", line 18, in init self.oracle = get_test_oracle(args.oracle_split, File "/home/sunsun/xdzhang/clamp-gen-data-master/clamp_common_eval/defaults.py", line 51, in get_test_oracle return MLPOracle(source, feature) File "/home/sunsun/xdzhang/clamp-gen-data-master/clamp_common_eval/oracles/MLP.py", line 40, in init self.model.load_state_dict(torch.load(self.best_model_path, map_location=torch.device('cpu'))) File "/home/sunsun/xdzhang/BioSeq-GFN-AL-master/venv/lib/python3.8/site-packages/torch/serialization.py", line 608, in load return _legacy_load(opened_file, map_location, pickle_module, pickle_load_args) File "/home/sunsun/xdzhang/BioSeq-GFN-AL-master/venv/lib/python3.8/site-packages/torch/serialization.py", line 777, in _legacy_load magic_number = pickle_module.load(f, pickle_load_args) _pickle.UnpicklingError: invalid load key, 'v'.

phaphuang commented 2 years ago

You need to use "git lfs clone".

xdzhang-xdu commented 2 years ago

What difference will be brought? I tried, it didnt work.

phaphuang commented 2 years ago

You need to download the full size of .pkl files.

xdzhang-xdu commented 2 years ago

clamp_common_eval

You mean for the project design-bench and clamp_common_eval?

MJ10 commented 2 years ago

@xdzhang-xjtu Apologies for the late response. Could you please provide more details? I am unable to reproduce this issue.