Do you have script of evaluation part?

MJ10 / BioSeq-GFN-AL

Code for "Biological Sequence Design with GFlowNets", 2022

MIT License

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Do you have script of evaluation part? #3

Closed phaphuang closed 2 years ago

phaphuang commented 2 years ago

Hello, could you provide the evaluation script? To better evaluate the performance of model.

MJ10 commented 2 years ago

Hi, apologies for the late response, the code for evaluation (which logs the metrics) is already in the repo: https://github.com/MJ10/BioSeq-GFN-AL/blob/master/run_amp.py#L342

dlnp2 commented 2 years ago

@MJ10 Can I ask you a related question: How to reproduce the results in Table 3 of your paper? Specifically, how to "re-normalize" the GFP scores as mentioned in A.3 section? I tried run_gfp.py and got values like 1.4354270063340664 as top-128-scores, which seemed not to be normalized. Do you have any specific code in the repo?