Chapter Outlines

[MKLau]

Plan for Writing

• Finish analyses
• Summarize results
• Outline main results
• Get feedback from Tom
• Write abstract
• Write methods
• Write introduction
• Write discussion
• Get feedback from group

The differences among genotypes (i.e. the community level effect of genetic variance) is unlikely to be constant over time, but to rise and fall like a tide depending on abiotic flux and the dynamics of the associated community.

[MKLau]

CG Modeling

• use the perspective of understanding the associated community
• use the network perspective
• Figure X. PERMANOVA R2, network degree and co-occurrence analyses
• Figure X. Network with maximum degree and NMDS
• Figure X. Real data network

Gina + SCRL

• Test Height Effect
• NMDS + PERMANOVA + Bipartite Network + Netstedness
• Stand Level Network + Co-occurrence test
• Tree Level Network Averaged + Co-occurrence by genotype
• Roughness effects on co-occurrence stats

Target = Methods in Ecology and Evolution

[MKLau]

ACN

• NMDS + PERMANOVA + Bipartite Network + Netstedness
• Stand Level Network + Co-occurrence test
• Tree Level Network Averaged + Co-occurrence by genotype

Target = Ecology Letters

[MKLau]

LCO

• Test Height Effect
• NMDS + PERMANOVA + Bipartite Network + Netstedness
• Stand Level Network + Co-occurrence test
• Tree Level Network Averaged + Co-occurrence by genotype
• Roughness effects on co-occurrence stats

Target = PLoS

[MKLau]

ComGenR

• Write Vignette

Target = CRAN