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ML-Bioinfo-CEITEC / genomic_benchmarks

Benchmarks for classification of genomic sequences
Apache License 2.0
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Human ensembl regulatory #21

Closed katarinagresova closed 2 years ago

katarinagresova commented 2 years ago

New dataset created from data from Ensembl. I wanted to avoid generating negative sequences so I took tree regulatory elements (promoters, enhancers and open chromatin regions) and created multiclass classification dataset.

katarinagresova commented 2 years ago

TF experiment is still in progress - I just adapted code in one notebook to work for more than 2 classes

katarinagresova commented 2 years ago

@davidcechak can we make PyTorch code work for multiple classes?

davidcechak commented 2 years ago

@katarinagresova sure I can do it during Monday and Tuesday