I have installed this package and but I can't load the datasets.
My code is as follows:
from genomic_benchmarks.data_check import list_datasets
from genomic_benchmarks.dataset_getters.pytorch_datasets import get_dataset
from genomic_benchmarks.data_check import info
from genomic_benchmarks.loc2seq import download_dataset
When trying to download, for example, 'demo_coding_vs_intergenomic_seqs' I get FileNotFoundError: Dataset demo_coding_vs_intergenomic_seqs not found.
For completion's sake, I wrote code to attempt to download each of the datasets.
for dset in list_datasets():
try:
get_dataset(dset, split='train')
print("success!")
except:
print(dset, "not found")
The output is as follows:
demo_coding_vs_intergenomic_seqs not found
human_enhancers_cohn not found
human_ocr_ensembl not found
demo_human_or_worm not found
human_ensembl_regulatory not found
drosophila_enhancers_stark not found
dummy_mouse_enhancers_ensembl not found
human_enhancers_ensembl not found
human_nontata_promoters not found
The same occurs with the info and download_dataset functions as well. Any help on what I'm doing wrong would be appreciated.
I have installed this package and but I can't load the datasets.
My code is as follows:
When trying to download, for example,
'demo_coding_vs_intergenomic_seqs'I getFileNotFoundError: Dataset demo_coding_vs_intergenomic_seqsnot found.For completion's sake, I wrote code to attempt to download each of the datasets.
The output is as follows:
The same occurs with the
infoanddownload_datasetfunctions as well. Any help on what I'm doing wrong would be appreciated.