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ML4GLand
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SeqData
Annotated sequence data
MIT License
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Best practices to go from raw data to a clean seqdataset
#10
MiqG
opened
4 days ago
1
fix: add tests for dataloader transforms and to_zarr with non-uniform chunks.
#9
d-laub
closed
1 week ago
0
Can we list pyarrows as a dependency?
#8
algaebrown
closed
2 months ago
1
Add pyarrow dependency
#7
d-laub
closed
3 months ago
0
Might be worth adding pyarrow as a depedency(?)
#6
algaebrown
closed
3 months ago
0
Support for Insertions and Deletions in SeqData
#5
XinmingTu
closed
12 months ago
4
For BAMs, write total read counts to attrs for downstream normalization
#4
d-laub
closed
1 year ago
1
Possible error in VCF reader (dev branch)
#3
the-utkarshjain
closed
1 year ago
1
Fast XArray out-of-core dataloader and bugfix for BAM reader when using tn5 count methods.
#2
d-laub
closed
1 year ago
0
Rewrite SeqData using Xarray to support on-disk computation backed by Zarr.
#1
d-laub
closed
1 year ago
0