RPKM, FPKM, and TPM-like normalization

ML4GLand / SeqPro

Genomic sequence preprocessing toolkit

MIT License

10 stars 1 forks source link

RPKM, FPKM, and TPM-like normalization #8

Open d-laub opened 1 year ago

d-laub commented 1 year ago

Add a function for RPKM, FPKM, and TPKM-like normalization, given total counts. For example, to normalize read counts/depth from chromatin accessibility assays.

d-laub commented 1 year ago

See normalization options offered by deepTools' bamCoverage.