Zenodo data repository

[ShozenD]

TODO list

Deadline: ASAP

• [x] Provide outputs for all Stan models for people without access the high-performance computing
• [x] Make sure scripts are compatible with the Zenodo download
• [x] Move all data in the GitHub repository to Zenodo
  • [x] RCCS surveillance analysis
  • [x] Deep Sequence Phylogenies
• [x] @abriz97 Populate deep_sequence_phylogenies
• [x] @ShozenD Populate RCCS surveillance directory
• [x] @ShozenD Make sure pre-processing scripts are compatible with Zenodo
• [x] @ShozenD Remove stage 2 preprocessing (viral load 200 is just a sensitivity analysis)
• [x] @ShozenD Run pre-processing steps and check run-time & output data size
• [x] @abriz97 Provide skeleton path specification file to @ShozenD