Pathogen.jl: Infectious Disease Transmission Network Modelling with Julia

MLH-Fellowship / CodeVidLive

Live prediction for Corona Virus

MIT License

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Pathogen.jl: Infectious Disease Transmission Network Modelling with Julia #13

Open zzj0402 opened 4 years ago

zzj0402 commented 4 years ago

https://github.com/jangevaare/Pathogen.jl

zzj0402 commented 4 years ago

Pathogen.jl is a Julia software package for individual level models of infectious diseases

zzj0402 commented 4 years ago

Gibbs step

zzj0402 commented 4 years ago

MCMC algorithm

zzj0402 commented 4 years ago

https://github.com/jangevaare/Pathogen.jl/blob/master/examples/SIR%20Simulation/SIR%20TN-ILM%20Simulation%20and%20Inference.ipynb

zzj0402 commented 4 years ago

https://colab.research.google.com/github/zzj0402/2019_aarhus_critical_data/blob/master/install_julia.ipynb

zzj0402 commented 4 years ago

Precompiling CuArrays
┌ Warning: CUDA 10.2 is not supported by
│ your driver (which supports up to 10.1)
└ @ CUDAnative ~/.julia/packages/CUDAnative/Phjco/src/CUDAnative.jl:182
ERROR: LoadError: LoadError: LoadError: syntax: "CuArrays.CURAND.err" is not a valid function argument name

zzj0402 commented 4 years ago

https://anaconda.org/conda-forge/julia on quatern

zzj0402 commented 4 years ago

https://datatofish.com/install-package-julia/

zzj0402 commented 4 years ago

https://colab.research.google.com/drive/1qtQ3T_n9CMGD13kNVw1EH82IRpTH1kI2?usp=sharing#scrollTo=33iEFqFqD-_y&forceEdit=true&sandboxMode=true